Package: flare 1.7.0.1

flare: Family of Lasso Regression

Provide the implementation of a family of Lasso variants including Dantzig Selector, LAD Lasso, SQRT Lasso, Lq Lasso for estimating high dimensional sparse linear model. We adopt the alternating direction method of multipliers and convert the original optimization problem into a sequential L1 penalized least square minimization problem, which can be efficiently solved by linearization algorithm. A multi-stage screening approach is adopted for further acceleration. Besides the sparse linear model estimation, we also provide the extension of these Lasso variants to sparse Gaussian graphical model estimation including TIGER and CLIME using either L1 or adaptive penalty. Missing values can be tolerated for Dantzig selector and CLIME. The computation is memory-optimized using the sparse matrix output. For more information, please refer to <https://www.jmlr.org/papers/volume16/li15a/li15a.pdf>.

Authors:Xingguo Li, Tuo Zhao, Lie Wang, Xiaoming Yuan, and Han Liu

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flare/json (API)

# Install 'flare' in R:
install.packages('flare', repos = c('https://mlcoding.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • x - The Bardet-Biedl syndrome Gene expression data from Scheetz et al.
  • y - The Bardet-Biedl syndrome Gene expression data from Scheetz et al.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

25 exports 1 stars 1.51 score 12 dependencies 4 dependents 1 mentions 140 scripts 677 downloads

Last updated 2 years agofrom:c76c10285b. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 02 2024
R-4.5-win-x86_64OKSep 02 2024
R-4.5-linux-x86_64OKSep 02 2024
R-4.4-win-x86_64OKSep 02 2024
R-4.4-mac-x86_64OKSep 02 2024
R-4.4-mac-aarch64OKSep 02 2024
R-4.3-win-x86_64OKSep 02 2024
R-4.3-mac-x86_64OKSep 02 2024
R-4.3-mac-aarch64OKSep 02 2024

Exports:coef.slimplot.rocplot.selectplot.simplot.slimplot.sugmpredict.slimprint.rocprint.selectprint.simprint.slimprint.sugmslimslim.dantzig.ladm.scrslim.lad.ladm.scr.btrslim.lasso.ladm.scrslim.lq.ladm.scr.btrslim.sqrt.ladm.scrsugmsugm.clime.ladm.scrsugm.generatorsugm.plotsugm.rocsugm.selectsugm.tiger.ladm.scr

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs

vignette

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Last update: 2013-08-25
Started: 2013-08-25